Contents:
SimulationConfig
SimulationConfig.filepath
SimulationConfig.index_dict
SimulationConfig.flag_dict
SimulationConfig.data_file_dict
SimulationConfig.data
SimulationConfig.flags
SimulationConfig.text_variables
SimulationConfig.data_files
SimulationConfig.comment
SimulationConfig.__init__()
SimulationConfig.import_smc()
SimulationConfig.to_yaml_dict()
SimulationConfig.export_yaml()
SimulationConfig.import_yaml()
SimulationConfig.validate_parameters()
SimulationConfig.get_simind_version_info()
SimulationConfig.print_config()
SimulationConfig.get_value()
SimulationConfig.set_value()
SimulationConfig.get_flag()
SimulationConfig.set_flag()
SimulationConfig.set_data_file()
SimulationConfig.get_data_file()
SimulationConfig.get_comment()
SimulationConfig.set_comment()
SimulationConfig.save_file()
RuntimeSwitches
RuntimeSwitches.__init__()
RuntimeSwitches.combined_switch_dict
RuntimeSwitches.set_switch()
RuntimeSwitches.print_switches()
RuntimeSwitches.print_available_switches()
SimindExecutor
SimindExecutor.__init__()
SimindExecutor.run_simulation()
BaseConnector
BaseConnector.add_config_value()
BaseConnector.add_runtime_switch()
BaseConnector.set_runtime_switches()
BaseConnector.run()
BaseConnector.get_outputs()
BaseConnector.get_config()
NumpyConnector
PyTomographySimindAdaptor
PyTomographySimindAdaptor.__init__()
PyTomographySimindAdaptor.set_source()
PyTomographySimindAdaptor.set_mu_map()
PyTomographySimindAdaptor.set_energy_windows()
PyTomographySimindAdaptor.add_config_value()
PyTomographySimindAdaptor.add_runtime_switch()
PyTomographySimindAdaptor.run()
PyTomographySimindAdaptor.get_outputs()
PyTomographySimindAdaptor.get_output_metadata()
PyTomographySimindAdaptor.get_output_header_path()
PyTomographySimindAdaptor.get_total_output()
PyTomographySimindAdaptor.get_scatter_output()
PyTomographySimindAdaptor.get_primary_output()
PyTomographySimindAdaptor.get_air_output()
PyTomographySimindAdaptor.get_config()
PyTomographySimindAdaptor.from_simind_image_axes()
PyTomographySimindAdaptor.to_simind_image_axes()
ProjectionResult
ProjectionResult.projection
ProjectionResult.header_path
ProjectionResult.data_path
ProjectionResult.metadata
ProjectionResult.__init__()
RuntimeOperator
RuntimeOperator.switches
RuntimeOperator.orbit_file
RuntimeOperator.__init__()
SirfSimindAdaptor
SirfSimindAdaptor.__init__()
SirfSimindAdaptor.set_source()
SirfSimindAdaptor.set_mu_map()
SirfSimindAdaptor.set_energy_windows()
SirfSimindAdaptor.add_config_value()
SirfSimindAdaptor.add_runtime_switch()
SirfSimindAdaptor.run()
SirfSimindAdaptor.get_outputs()
SirfSimindAdaptor.get_total_output()
SirfSimindAdaptor.get_scatter_output()
SirfSimindAdaptor.get_primary_output()
SirfSimindAdaptor.get_air_output()
SirfSimindAdaptor.get_penetrate_output()
SirfSimindAdaptor.list_available_outputs()
SirfSimindAdaptor.get_scoring_routine()
SirfSimindAdaptor.get_config()
SimindPythonConnector
SimindPythonConnector.__init__()
SimindPythonConnector.add_runtime_switch()
SimindPythonConnector.add_config_value()
SimindPythonConnector.configure_voxel_phantom()
SimindPythonConnector.set_energy_windows()
SimindPythonConnector.run()
SimindPythonConnector.get_outputs()
SimindPythonConnector.get_config()
StirSimindAdaptor
StirSimindAdaptor.__init__()
StirSimindAdaptor.set_source()
StirSimindAdaptor.set_mu_map()
StirSimindAdaptor.set_energy_windows()
StirSimindAdaptor.add_config_value()
StirSimindAdaptor.add_runtime_switch()
StirSimindAdaptor.run()
StirSimindAdaptor.get_outputs()
StirSimindAdaptor.get_total_output()
StirSimindAdaptor.get_scatter_output()
StirSimindAdaptor.get_primary_output()
StirSimindAdaptor.get_air_output()
StirSimindAdaptor.get_penetrate_output()
StirSimindAdaptor.list_available_outputs()
StirSimindAdaptor.get_scoring_routine()
StirSimindAdaptor.get_config()
get_package_data_path()
interpolate_attenuation_coefficient()
get_attenuation_coefficient()
hu_to_attenuation()
hu_to_density()
attenuation_to_density()
load_schneider_data()
hu_to_density_schneider_piecewise()
hu_to_density_schneider()
get_schneider_tissue_info()
compare_density_methods()
ConversionConfig
ConversionConfig.radius_scale_factor
ConversionConfig.angle_offset
ConversionConfig.default_number_format
ConversionConfig.ignored_patterns
ConversionConfig.__init__()
ConversionRule
ConversionRule.matches()
ConversionRule.convert()
RadiusConversionRule
RadiusConversionRule.__init__()
RadiusConversionRule.matches()
RadiusConversionRule.convert()
OrbitFileRule
OrbitFileRule.__init__()
OrbitFileRule.matches()
OrbitFileRule.convert()
StartAngleConversionRule
StartAngleConversionRule.__init__()
StartAngleConversionRule.matches()
StartAngleConversionRule.convert()
RotationDirectionRule
RotationDirectionRule.matches()
RotationDirectionRule.convert()
NumberFormatRule
NumberFormatRule.matches()
NumberFormatRule.convert()
OrbitConversionRule
OrbitConversionRule.matches()
OrbitConversionRule.convert()
ImageDurationRule
ImageDurationRule.matches()
ImageDurationRule.convert()
EnergyWindowRule
EnergyWindowRule.__init__()
EnergyWindowRule.matches()
EnergyWindowRule.convert()
DataFileNameRule
DataFileNameRule.__init__()
DataFileNameRule.matches()
DataFileNameRule.convert()
IgnorePatternRule
IgnorePatternRule.__init__()
IgnorePatternRule.matches()
IgnorePatternRule.convert()
SimindToStirConverter
SimindToStirConverter.__init__()
SimindToStirConverter.convert_line()
SimindToStirConverter.convert_file()
SimindToStirConverter.create_penetrate_headers_from_template()
SimindToStirConverter.find_penetrate_h00_file()
SimindToStirConverter.read_parameter()
SimindToStirConverter.edit_parameter()
SimindToStirConverter.add_parameter()
SimindToStirConverter.validate_and_fix_scaling_factors()
SimindToStirConverter.add_custom_rule()
SimindToStirConverter.validate_and_correct_radius()
parse_sinogram()
parse_interfile()
get_sirf_attenuation_from_simind()
convert_value()
harmonize_stir_attributes()
extract_attributes_from_stir()
extract_attributes_from_stir_headerfile()
create_stir_image()
create_stir_acqdata()
create_simple_phantom()
create_attenuation_map()
SimindError
SimindNotFoundError
create_window_file()
temporary_directory()
InterfileArray
InterfileArray.array
InterfileArray.header_path
InterfileArray.data_path
InterfileArray.metadata
InterfileArray.__init__()
load_interfile_array()
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Module Index
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